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PNNL-CompBio / earlyLateAMLresistance

Investigations into differences between early and late resistance in AML patients
MIT License
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Map metadata to global and phospho proteomics and upload to synapse table #2

Closed sgosline closed 3 years ago

sgosline commented 3 years ago

Once the data has been uploaded (#1) we can upload to Synapse.

This is the template for data processing: https://github.com/PNNL-CompBio/p3/blob/main/dataProcessing/proteomicDataProcessing.Rmd

CamiloPosso commented 3 years ago

Hi Sara. Looking at the metadata table, I see the following columns.

Sample ID: Unique sample identifier Plex: Plex ID Channel: TMT channel Loading Mass: I'm not sure of the meaning of this one, but it has numeric entries from about 50 to 200. PNNL ID: Another unique sample identifier BeatAML Patient ID: These are not unique to the samples. Some are numbers, others strings (Cell Line) Tx Status: This one is the most cryptic. About half the entries are missing here. I can go into more detail about these entries here if you want.

sgosline commented 3 years ago

I'm assuming that patient id is some number like 15-632111? I think the first 2 correspond to year. Let's collect Sample ID, Loading Mass, patient ID and tx status (as string), Ithink those should be distinct, correct?

sgosline commented 3 years ago

Looks like this is complete, closing.