Provide a helper function for converting IDs of the form sp|Z|X_Y to gene names

PNNL-CompBio / spammR

Spatial Analysis of Multiomics Measurement in R

Other

6 stars 0 forks source link

Provide a helper function for converting IDs of the form sp|Z|X_Y to gene names #6

Open HarkiratSohi opened 1 year ago

HarkiratSohi commented 1 year ago

This is needed for any pathway/geneset based analysis as the members in each geneset are given as gene names, not protein identifiers. Will use the Uniprot database to do this matching. Will provide these databases for mouse and human as part of SpammR.