This issue will be used to generally control all the major functionalities and use cases needed for the European Proteome-Metabolome Archive, which will include only Controlled Access data. We aim to do the first release by the end of 2024.
Use Cases:
Data Storage for Research Institutions: Provide a secure and centralized repository for research institutions to store and share proteomics and metabolomics data for various studies and projects.
Collaborative Research: Facilitate collaboration among researchers by allowing them to access and analyze proteomics and metabolomics data collectively.
Data protection and access: Support the storage and retrieval of proteomics and metabolomics data, ensuring compliance with data protection regulations and ethical standards.
Data Encryption and Access Control: Implement robust security measures to ensure the privacy and confidentiality of sensitive proteomics and metabolomics information.
Regulatory Compliance: Facilitate compliance with data protection regulations and ethical guidelines governing the handling of proteomics and metabolomics data.
Global Data Sharing: Enable cross-border collaboration by establishing interoperability with other open-data and controlled access omics (e.g. EGA, PRIDE, GNPS) archives worldwide.
Standardization: Adopt and promote data standards to ensure compatibility and ease of data exchange with international partners.
Requirements:
Submissions will not be divided into Complete and Partial as in PRIDE database. In contrast, submissions will be "classify" by the level of details and files they provide.
Submissions will be handled during the publication process. The concept of private submission (as in PRIDE) will disappear, and datasets MUST be accessible from the beginning of the submission.
Major Infrastructure issues:
Submissions should be encrypted issues #5
Submissions should be performed using the Globus services #2 #3
Database must be encrypted #4
Validation and Submission pipelines #6
Submission web system #7
Legal Framework for data deposition and retrieve #8
Define the secure infrastructure to deploy the pipelines #6 #10
This issue will be used to generally control all the major functionalities and use cases needed for the European Proteome-Metabolome Archive, which will include only Controlled Access data. We aim to do the first release by the end of 2024.
Use Cases:
Data Storage for Research Institutions: Provide a secure and centralized repository for research institutions to store and share proteomics and metabolomics data for various studies and projects.
Collaborative Research: Facilitate collaboration among researchers by allowing them to access and analyze proteomics and metabolomics data collectively.
Data protection and access: Support the storage and retrieval of proteomics and metabolomics data, ensuring compliance with data protection regulations and ethical standards.
Data Encryption and Access Control: Implement robust security measures to ensure the privacy and confidentiality of sensitive proteomics and metabolomics information.
Regulatory Compliance: Facilitate compliance with data protection regulations and ethical guidelines governing the handling of proteomics and metabolomics data.
Global Data Sharing: Enable cross-border collaboration by establishing interoperability with other open-data and controlled access omics (e.g. EGA, PRIDE, GNPS) archives worldwide.
Standardization: Adopt and promote data standards to ensure compatibility and ease of data exchange with international partners.
Requirements:
CompleteandPartialas in PRIDE database. In contrast, submissions will be "classify" by the level of details and files they provide.Major Infrastructure issues: