@sureshhewabi One of the things we need to guarantee in the following implementations is that we return the Set of PTMs for all the identified peptides, not the ones defined for search parameters. This needs to be consistent, we need to have a function that retrieves as CVterms all the modifications, not the one that was used for identification but the actual identified ones.
sureshhewabi
commented
6 years ago
@sureshhewabi One of the things we need to guarantee in the following implementations is that we return the Set of PTMs for all the identified peptides, not the ones defined for search parameters. This needs to be consistent, we need to have a function that retrieves as CVterms all the modifications, not the one that was used for identification but the actual identified ones.