Open GoogleCodeExporter opened 9 years ago
Dear Hongtao,
The PRIDE Converter 2 tool still may have problems dealing with input .msf
files, despite previous updates to improve support for that format. It is
unlikely that this is going to be changed further in the future.
As an alternative to PRIDE XML, the ProeomeXchange and PRIDE support the
mzIdentML format: http://www.ebi.ac.uk/pride/help/archive/submission/mzidentml
So in your case with your files, the best thing(*) would be to convert your msf
files into mzIdentML (and peak files) with the ProCon tool:
http://www.ruhr-uni-bochum.de/mpc/software/ProCon/index.html.en
(*)The problem at the moment is that ProCon cannot generate valid mzIdentML
files. Work is currently underway to update ProCon, so hopefully in the near
future everything will be working well.
Best regards,
Tobias Ternent
Bioinformatician
PRIDE Team
Original comment by tob...@ebi.ac.uk
on 22 Jan 2015 at 8:57
Original issue reported on code.google.com by
hongta...@gmail.com
on 21 Jan 2015 at 9:41Attachments: