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PRIDE-Archive / pride-curation-scripts

Useful PRIDE Pipelines curation scripts
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Improve Validation jobs #6

Closed sureshhewabi closed 5 years ago

sureshhewabi commented 5 years ago

Eg: We had issues in validating following submissions:

9900888 pst_prd RUN   production-rh7 ebi-cli-001 hx-noah-02-04 validation-1-20181203-132710-RESUB1-0001 Jan 16 09:41

122450  pst_prd RUN   production-rh7 ebi-cli-002 ebi5-142    validation-1-20190115-176301 Jan 17 08:58 146414  pst_prd RUN   production-rh7 ebi-cli-001 hx-noah-03-12 validation-1-20190111-garras_PX-0005 Jan 17 09:58 183443  pst_prd RUN   production-rh7 ebi-cli-002 hx-noah-04-06 validation-1-20190111-110372-0001 Jan 17 11:29 382037  pst_prd RUN   production-rh7 ebi-cli-001 hx-noah-04-06 validation-1-20190116-152756 Jan 18 09:42 246108  pst_prd RUN   production-rh7 ebi-cli-002 hx-noah-03-10 validation-1-20190117-76064 Jan 17 14:03 485601  pst_prd RUN   production-rh7 ebi-cli-001 ebi5-200    validation-PXD011984-RESUB1 Jan 18 17:35 184137  pst_prd RUN   production-rh7 ebi-cli-002 hx-noah-01-15 validation-1-20190110-jSchultzhaus_PX-0001 Jan 17 11:39 380503  pst_prd RUN   production-rh7 ebi-cli-002 hx-noah-04-08 validation-1-20190115-157714 Jan 18 09:27 856296  pst_prd RUN   production-rh7 ebi-cli-001 hx-noah-01-13 validation-1-20190110-146124-0002 Jan 21 09:38 860000  pst_prd RUN   production-rh7 ebi-cli-003 hx-noah-01-03 validation-1-20190119-166270 Jan 21 10:56

sureshhewabi commented 5 years ago

Validation Job memory limit decreased from 60000M to 20000M

sureshhewabi commented 5 years ago

Assay Validation job memory limit decreased from 95000M to 30000M