PRIDE-Archive pride-inspector issues

PRIDE-Archive / pride-inspector

PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics

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Mascot F002870.mid with and without MS/MS annotations plus the corresponding mgf file

#28 ypriverol closed 9 years ago
1
Use other colors for protein group circles, less intensive.

#27 ypriverol closed 9 years ago
1
Pull connected elements into the group visualization

#26 julianu closed 9 years ago
3
visualisation of protein inference bugs and improvements

#25 ypriverol closed 9 years ago
1
Add tooltip to Spectra when the spectra is missing in mzIdentML

#24 ypriverol closed 10 years ago
1
For protein groups define new icons in JTreeTable

#23 ypriverol closed 10 years ago
1
nice layout for protein groups visualization

#22 julianu closed 10 years ago
0
by default the user should be able to select the nodes and the PSM table should be populated

#21 ypriverol closed 10 years ago
1
the color of the nodes in the protein inference visualization must be reviewed

#20 ypriverol closed 10 years ago
2
first running version for visualization

#19 julianu closed 10 years ago
1
Failed to open assay file 38624

#18 ruiwanguk closed 9 years ago
1
When web services are unavailable, the PI need to retrieve a message

#17 ypriverol closed 10 years ago
1
sorting by protein id is not working

#16 ypriverol closed 10 years ago
1
decrease the size of the letter to earn some space and use Sparkline

#15 ypriverol closed 9 years ago
1
Visualisation of protein groups for those files that contains protein groups information

#14 ypriverol closed 9 years ago
1
Add quantitation information for mzTab files

#13 ypriverol closed 10 years ago
1
Add the protein sequence database locally

#12 ypriverol closed 9 years ago
0
Modification in assay summary

#11 ruiwanguk closed 10 years ago
0
Deprecated Java classes

#10 ruiwanguk closed 9 years ago
1
fix the update of table protein always update the psm table.

#9 ypriverol closed 10 years ago
0
integrate the exporter from ms-data-core-api to mztab

#8 ypriverol closed 9 years ago
1
Connet to web services an retrieve the data from PRIDE

#7 ypriverol closed 9 years ago
2
It would be nice to include some charts about quantitation data

#6 ypriverol closed 10 years ago
0
Freezing of the initial screen after loading an experiment file

#5 ruiwanguk closed 10 years ago
0
PSM instead of peptides

#4 ruiwanguk closed 10 years ago
0
FDR set

#3 ypriverol closed 9 years ago
0
Decide and implement one chart for quatitation quality assessment

#2 ypriverol closed 10 years ago
1
Global Filter for PSM using Search Engine Scores

#1 ypriverol opened 10 years ago
0