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PRIDE-Archive / pride-web

PRIDE Resources Web application
https://www.ebi.ac.uk/pride/
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Separate pubmed & doi fileds in 'publish project' form #247

Closed chakrabandla closed 2 years ago

chakrabandla commented 3 years ago

In 'publish project' form pubmed/doi filed is not mandatory anymore. So, it's better to separate those fields.

The current drop down is causing confusion to users.

javizca commented 3 years ago

Just for clarification purposes. DOI or PMID need to be mandatory for non-registered users (anonymous) For registered ones, it should not be mandatory (of course, for their own datasets only)

chakrabandla commented 3 years ago

Is there an option to request publication of other's dataset from pride web?

javizca commented 3 years ago

Yes,

see e.g. https://www.ebi.ac.uk/pride/archive/projects/PXD022001/publish

People can request this anonymously (for instance, when reading a paper, and the corresponding dataset has not been made yet public by the authors of the paper)

chakrabandla commented 3 years ago

OK.. Just curious, how do user navigate to that page? Do they have have to know the URL ? I couldn't figure out how to navigate from web :)

chakrabandla commented 3 years ago

Yes,

see e.g. https://www.ebi.ac.uk/pride/archive/projects/PXD022001/publish

People can request this anonymously (for instance, when reading a paper, and the corresponding dataset has not been made yet public by the authors of the paper)

Just checked about this functionality & can confirm that this is not currently supported

javizca commented 3 years ago

this page is available from ProteomeCentral, when a PRIDE dataset is not public there, for instance:

http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD022001

We added that link there to facilitate the reporting of datasets that should be made public I think it is used relatively often