Closed ypriverol closed 8 months ago
API needed:
/summary
accession, title, publication, No of proteins, No of peptides, No of Spectra, Aggregated View link - filtered by "contains_crosslinks"[ { "accession": "PXD038060", "title": "AlphaLink: bringing protein structure prediction in situ with in-cell photo-crosslinking mass spectrometry, crosslinking mass spectrometry, XL-MS,", "pubmed_id": 29736013, "proteins": 123456, "peptides": 456789, "spectra": 890378, "aggregated_view": "some link here" }, { "accession": "PXD038060", "title": "Yeast Elongator Complex Elp1-6", "pubmed_id": 345234, "proteins": 623456, "peptides": 756789, "spectra": 990378, "aggregated_view": "some link here" } ]
/detailed/<accession>
{ "accession": "PXD038060", "title": "AlphaLink: bringing protein structure prediction in situ with in-cell photo-crosslinking mass spectrometry, crosslinking mass spectrometry, XL-MS,", "description": "AlphaLink: bringing protein structure prediction in situ with in-cell photo-crosslinking mass spectrometry, crosslinking mass spectrometry, XL-MS,", "pubmed_id": 29736013, "protein_details": [ { "proteins": "ABC", "peptides": 300, "spectra": 900, "cross_linking": 8, "pdb": "some link here for ABC" }, { "proteins": "DEF", "peptides": 400, "spectra": 800, "cross_linking": 9, "pdb": "some link here for DEF" }, { "proteins": "HIJ", "peptides": 350, "spectra": 700, "cross_linking": 3, "pdb": "some link here for HIJ" } ] }
done
We need a web page with the list of datasets already imported in the 3D proteomics. The page should provide the following functionalities:
See attached mockup. The web page will be part of PRIDE web app. The url of that page is: https://www.ebi.ac.uk/pride/archive/xiview