search

PRIDE-Archive / xi-mzidentml-converter

Apache License 2.0
0 stars 0 forks source link

Issues with Gene Names fetch from Uniprot #24

Closed sureshhewabi closed 5 months ago

sureshhewabi commented 7 months ago

Eg: ggFANCI or RpoE accession is incorrect

https://rest.uniprot.org/uniprotkb/search?query=accession:ggFANCD2%20OR%20ggFANCI_3D%20OR%20ggFANCI&fields=protein_name,gene_primary&size=50

https://rest.uniprot.org/uniprotkb/search?query=accession:HelD%20OR%20RpoA%20OR%20RpoB%20OR%20RpoC%20OR%20RpoE%20OR%20RpoY%20OR%20SigA%20OR%20SigB&fields=protein_name,gene_primary&size=50
colin-combe commented 7 months ago

also, some data sets have valid accession numbers but missing names and gene names - e.g. PXD022936 I think its because the accession numbers are from trembl (unreviewed)

ypriverol commented 5 months ago

Discussion internal with @sureshhewabi make clear we can close this issue.