PRIDE-Toolsuite / pride-converter-2

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Issue Trying to Convert PD Files #22

Open craigulrich11 opened 6 years ago

craigulrich11 commented 6 years ago

I keep getting the error below when I select Proteome Discoverer as my file option....

Please help

An error occurred while processing the conversion java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError: Could not initialize class uk.ac.ebi.pride.tools.converter.dao.impl.msf.MsfDao at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at javax.swing.SwingWorker.get(Unknown Source) at uk.ac.ebi.pride.tools.converter.gui.NavigationPanel$5.propertyChange(NavigationPanel.java:354) at java.beans.PropertyChangeSupport.fire(Unknown Source) at java.beans.PropertyChangeSupport.firePropertyChange(Unknown Source) at javax.swing.SwingWorker$SwingWorkerPropertyChangeSupport.firePropertyChange(Unknown Source) at javax.swing.SwingWorker$SwingWorkerPropertyChangeSupport$1.run(Unknown Source) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source) at sun.swing.AccumulativeRunnable.run(Unknown Source) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source) at javax.swing.Timer.fireActionPerformed(Unknown Source) at javax.swing.Timer$DoPostEvent.run(Unknown Source) at java.awt.event.InvocationEvent.dispatch(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.WaitDispatchSupport$2.run(Unknown Source) at java.awt.WaitDispatchSupport$4.run(Unknown Source) at java.awt.WaitDispatchSupport$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.awt.WaitDispatchSupport.enter(Unknown Source) at java.awt.Dialog.show(Unknown Source) at java.awt.Component.show(Unknown Source) at java.awt.Component.setVisible(Unknown Source) at java.awt.Window.setVisible(Unknown Source) at java.awt.Dialog.setVisible(Unknown Source) at uk.ac.ebi.pride.tools.converter.gui.NavigationPanel.next(NavigationPanel.java:435) at uk.ac.ebi.pride.tools.converter.gui.NavigationPanel.access$1400(NavigationPanel.java:47) at uk.ac.ebi.pride.tools.converter.gui.NavigationPanel$7.actionPerformed(NavigationPanel.java:754) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) at com.jtattoo.plaf.BaseButtonListener.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: java.lang.NoClassDefFoundError: Could not initialize class uk.ac.ebi.pride.tools.converter.dao.impl.msf.MsfDao at uk.ac.ebi.pride.tools.converter.dao.DAOFactory.getDAO(DAOFactory.java:178) at uk.ac.ebi.pride.tools.converter.dao.DAOFactory.getDAO(DAOFactory.java:128) at uk.ac.ebi.pride.tools.converter.gui.util.IOUtilities.generateReportFile(IOUtilities.java:363) at uk.ac.ebi.pride.tools.converter.gui.util.IOUtilities.generateReportFiles(IOUtilities.java:264) at uk.ac.ebi.pride.tools.converter.gui.forms.FileSelectionForm.finish(FileSelectionForm.java:1338) at uk.ac.ebi.pride.tools.converter.gui.NavigationPanel$4.doInBackground(NavigationPanel.java:334) at javax.swing.SwingWorker$1.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at javax.swing.SwingWorker.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) MODULE: NAVIGATOR_PANEL