PRIDE-Utilities / pride-mod

PRIDE-Mod is a Java API to handle different modifications such as UNIMOD or PSI-MOD.
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TMT16 plex labels "TMT133N, TMT133C, TMT134N" not present in the PRIDE ontology #10

Open subinamehta opened 1 year ago

subinamehta commented 1 year ago

Hello, Could we please add the following TMT16 plex labels "TMT133N, TMT133C, TMT134N" to the PRIDE ontology section? We are trying to upload TMT-16plex files onto Proteome exchange and the SDRF file keeps failing as the ontology doesn't have TMT16plex labels.

Error: 2022-10-05 12:44:59,504 INFO [pool-1-thread-10] u.a.e.p.s.v.Main [Main.java:111] ERROR : Value is not match with ontology', value='tmt134n', row=127, column='comment[label]' 2022-10-05 12:44:59,504 INFO [pool-1-thread-10] u.a.e.p.s.v.Main [Main.java:111] ERROR : Value is not match with ontology', value='tmt133c', row=119, column='comment[label]' 2022-10-05 12:44:59,504 INFO [pool-1-thread-10] u.a.e.p.s.v.Main [Main.java:111] ERROR : Value is not match with ontology', value='tmt133n', row=111,

Thanks for your help!

subinamehta commented 1 year ago

@ypriverol