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PRIDE-Utilities / pubmed-id-fetcher

Apache License 2.0
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Parsing error JSON object #4

Closed sureshhewabi closed 2 years ago

sureshhewabi commented 4 years ago

Request:

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=ext_id:26793209%20src:med&format=json

Response:

{"version":"6.2","hitCount":1,"nextCursorMark":"AoIIQBKxoygzNDc2NTUxOQ==","request":{"queryString":"ext_id:26793209 src:med","resultType":"lite","cursorMark":"*","pageSize":25,"sort":"","synonym":false},"resultList":{"result":[{"id":"26793209","source":"MED","pmid":"26793209","pmcid":"PMC4707257","doi":"10.3389/fpls.2015.01229","title":"RNA-seq Analysis of Nepenthes ampullaria.","authorString":"Wan Zakaria WN, Loke KK, Zulkapli MM, Mohd Salleh F', Goh HH, Mohd Noor N.","journalTitle":"Front Plant Sci","journalVolume":"6","pubYear":"2015","journalIssn":"1664-462x","pageInfo":"1229","pubType":"other; journal article","isOpenAccess":"Y","inEPMC":"Y","inPMC":"N","hasPDF":"Y","hasBook":"N","hasSuppl":"N","citedByCount":4,"hasReferences":"Y","hasTextMinedTerms":"Y","hasDbCrossReferences":"Y","dbCrossReferenceList":{"dbName":["PRIDE"]},"hasLabsLinks":"Y","hasTMAccessionNumbers":"Y","tmAccessionTypeList":{"accessionType":["gen"]},"firstIndexDate":"2016-01-22","firstPublicationDate":"2015-01-01"}]}}

ERROR:

org.springframework.http.converter.HttpMessageNotReadableException: Could not read JSON: Unrecognized field "queryString" (class uk.ac.ebi.pride.pubmed.model.EupmcRequest), not marked as ignorable (6 known properties: "pageSize", "cursorMark", "resultType", "query", "synonym", "sort"])
 at [Source: org.apache.http.conn.EofSensorInputStream@6b739528; line: 1, column: 101] (through reference chain: uk.ac.ebi.pride.pubmed.model.EupmcResponse["request"]->uk.ac.ebi.pride.pubmed.model.EupmcRequest["queryString"]); nested exception is com.fasterxml.jackson.databind.exc.UnrecognizedPropertyException: Unrecognized field "queryString" (class uk.ac.ebi.pride.pubmed.model.EupmcRequest), not marked as ignorable (6 known properties: "pageSize", "cursorMark", "resultType", "query", "synonym", "sort"])
 at [Source: org.apache.http.conn.EofSensorInputStream@6b739528; line: 1, column: 101] (through reference chain: uk.ac.ebi.pride.pubmed.model.EupmcResponse["request"]->uk.ac.ebi.pride.pubmed.model.EupmcRequest["queryString"])
sureshhewabi commented 4 years ago

I changed the query attribute to queryString in uk.ac.ebi.pride.pubmed.model.EupmcRequest

chakrabandla commented 4 years ago

is this fixed?

ypriverol commented 2 years ago

Is this fixed ?