PRIME-RE / prime-re.github.io

Open resource exchange platform for non-human primate neuroimaging
https://prime-re.github.io
MIT License
17 stars 7 forks source link

Juna.Chimp #49

Closed viko18 closed 3 years ago

viko18 commented 3 years ago

Resource info table

Name Juna.Chimp Templates & Davi130 parcellation
Authors Sam Vickery, William D Hopkins, Chet C Sherwood, Steven J Schapiro, Jona Fischer, Robert D Latzman, Svenja Caspers, Christian Gaser, Simon B Eickhoff, Robert Dahnke , Felix Hoffstaedter
Description We provide a chimpanzee structural T1w template, chimpanzee tissue probability maps (TPM), and a manual macroanatomical parcellation of the chimpanzee brain which can be interactively viewed through a web viewer. Additionally, we supply an exemplar preprocessing pipeline using CAT12 with the required templates including a chimpanzee geodesic shooting template.
Documentation https://github.com/viko18/JunaChimp
Link http://junachimp.inm7.de/
Language Volumetric files are in NIFTI (.nii) format, matlab
Publication https://elifesciences.org/articles/60136
Communication email address: s.vickery@fz-juelich.de and/or open an issue at https://github.com/viko18/JunaChimp
Restrictions Please cite our publication if you use this resource
Category structural template, preprocessing templates, and macroanatomical parcellation

Please check the applicable boxes

Instructions

Please fill out the table above as completely as possible, i.e. replace the complete str > .... < with your information. Then submit it as a new issue and tag the issue with all applicable (yellow) categorical tags to specify what type of resource you are contributing. We will use this table and these tags to add your resource to the main list.

Name

Provide a name for your resource. Try to make it a bit descriptive, but as long as it as not incredibly offensive, we will allow it.

Authors

Who wrote the resource or deserves to be credited? This would be a good place to list them.

Description

Tell the community what it is that your resource does. Keep it concise (a few lines).

Documentation

Does your resource include instructions on how to use it, and if so, where? This can be a hyperlink, or you can simply state that it can be found through the main link (e.g., because it's in a GitHub ReadMe.md). Jupyter Notebooks or richly annotated scripts would be great, but any documentation would be great.

Link

Provide a link to the resource. This can be a link to a GitHub repository, website, or shared file. If you don't already have your resource hosted somewhere and would like to have it hosted on this GitHub, tell us and provide us with a link to the resource (Dropbox, Google Drive, WeTransfer, etc)

Language

What language (e.g., python, shell, matlab, etc) is your resource in? This will help people to look at solutions in languages they are familiar with first. We will accept anything.

Associated publications (if available)

If your resource is a published method, you can link to the paper here.

Communication

How can a potential user get in contact with the submitter/author of the resource? Is there a Slack or Mattermost channel? Can issues be opened on a GitHub repo? Is there an email adress? If you want to submit your resource 'as-is' and not offer any means for communication you can also mention that.

Restrictions

Are there any limitations for how the analysis method can be used (e.g., citation or acknowledgement required, etc)?

Category

What is the most suitable category to list your resource under?

Checkboxes

Please indicate whether ethical approval was acquired for activities related to the development of this resource, or whether this wasn't necessary. Also, indicate if you do not want your resource advertised in sparsely sent updates from the PRIME-RE team to the community.

pcklink commented 3 years ago

Added at https://prime-re.github.io/templates_and_atlases_chimpansee.html available through https://prime-re.github.io/templates_and_atlases.

Thanks you for contributing to open NHP neuroimaging resource sharing!

viko18 commented 3 years ago

Added Nifti to description, fixed some typo's and the link should be chimpanZee not chimpanSee. Thanks.

pcklink commented 3 years ago

Fixed.