If pseudoalignments from paired reads are used as input and one or the other - for whatever reason - has differring number of alignments (reads) in it, mGEMS will exit with the error Error: stoul exiting.
It might be a good idea to verify the number of reads and alignments before running, or otherwise give a more informative error message when this happens.
tmaklin
commented
1 year ago
If pseudoalignments from paired reads are used as input and one or the other - for whatever reason - has differring number of alignments (reads) in it, mGEMS will exit with the error
Error: stoul exiting.It might be a good idea to verify the number of reads and alignments before running, or otherwise give a more informative error message when this happens.