mSWEEP v1.5.0 (15 October 2021) - Githubissues

PROBIC / mSWEEP

mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

MIT License

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mSWEEP v1.5.0 (15 October 2021) #14

Closed tmaklin closed 3 years ago

tmaklin commented 3 years ago

Fall foliage edition: code restructuring and new features.

New Features

New --write-likelihood option to extract the likelihood matrix that mSWEEP uses internally (see #11).
Added --no-fit-model toggle to skip the relative abundance estimation part (see #11).
Support supplying multiple groupings via the -i or --groups-list toggles (resolves #7).

Bugfixes

Removed the extra line at the end of output when running in bootstrap mode (resolved #6 with #10 ).

Internal changes

Some code restructuring to make adding new features easier.
Hopefully improved code readability and a bit of documentation.
Renamed some variables and functions that used the old "bitfields" naming scheme.
Resolved some compiler warnings that arose when compiling with -Wall -Wextra -Wpedantic.
Made several integer types explicit with (u)int32_t style typing.
The Grouping and Reference structs have been separated and made into proper classes.