mSWEEP-v1.5.1 (9 November 2021) - Githubissues

PROBIC / mSWEEP

mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

MIT License

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mSWEEP-v1.5.1 (9 November 2021) #15

Closed tmaklin closed 2 years ago

tmaklin commented 2 years ago

Finally published edition.

New features

New --version toggle prints the version of the program.
New --cite toggle prints the citation information for the mSWEEP article in Wellcome Open Research.

Documentation

Added info about the doi for specific versions of mSWEEP to the readme file.

Build pipeline changes

Download dependencies that are used by mSWEEP and/or some other dependencies only once and reuse them.
Download cxxio when building instead of shipping with mSWEEP.

Files restructuring

Moved config files from the main folder into config/.

Code restructuring

Renamed main.cpp to mSWEEP.cpp.
Use functions from dependencies when available instead of copying them to the mSWEEP source code.