PROBIC / mSWEEP

mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
MIT License
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Group indicators are not validated with Themisto input #4

Closed tmaklin closed 4 years ago

tmaklin commented 4 years ago

mSWEEP should stop the execution if the number of group indicators (supplied with the -i flag) does not match the input. When running with input data from Themisto, the program will happily keep executing even if the numbers do not match.

It might be possible to validate the indicators by supplying the Themisto index as an extra argument. This would have the added benefit that the group indicators no longer need to be supplied separately when using Themisto, because the index directory will contain them.

This change will have to wait until the format for Themisto indexes is finalized.