search

PROconsortium / PRoteinOntology

Other
14 stars 3 forks source link

Term issue: cdc2-Thr167P #265

Open ValWood opened 2 years ago

ValWood commented 2 years ago

PMID:1655416 cdc2-Thr167P.
(active form) SPBC11B10.09/P04551

@nataled I know I asked this numerous times before, but which link do I use to find all of the modified forms for a particular protein?

nataled commented 2 years ago

Hi Val, To get all forms encoded by a specific gene, use GQ4 on this page: https://lod.proconsortium.org/yasgui.html and substitute the PomBase identifier of interest. Using PomBase:SPBC11B10.09 I get three specific phosphorylation states: 1) thr167-P without phosphorylation on thr14 or tyr15 2) thr167-P with tyr15-P (and silent with respect to thr14 phosphorylation) 3) phosphorylation on all three mentioned sites

Your request would be the fourth (thr167-P, silent with respect to phosphorylation state of the other two sites). Note that this is different from the first case, which specifies non-phosphorylation at positions 14/15.

Please let me know if I should proceed, or if (1) already fits what you want.

nataled commented 2 years ago

@ValWood Any thoughts on how you'd like me to proceed?

ValWood commented 2 years ago

HI @nataled I will need to confer with @JackyVH (Jaqueline Hayles) who is an expert on cdc2about the different P states (Jacky was also looking at this paper). This ticket is still in my inbox- I didn't forget, I also have another ticket hanging that I will likely get to first.

Happy New Year.

Val