Closed allenbaron closed 1 year ago
Describe the issue PROs SPARQL service is not usable in federated queries (returns "Service unavailable") or at https://lod.proconsortium.org/yasgui.html (returns response time but without any results displayed).
To Reproduce Steps to reproduce the behavior:
For federated query:
########### # PQ4 (from https://lod.proconsortium.org/yasgui.html) modified. # Retrieve proteoforms associated with CANCER disease progression. ###########
PREFIX rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# PREFIX rdfs: http://www.w3.org/2000/01/rdf-schema# PREFIX owl: http://www.w3.org/2002/07/owl# PREFIX xsd: http://www.w3.org/2001/XMLSchema# PREFIX dc: http://purl.org/dc/elements/1.1/ PREFIX dcterms: http://purl.org/dc/terms/ PREFIX obo: http://purl.obolibrary.org/obo/ PREFIX oboInOwl: http://www.geneontology.org/formats/oboInOwl# PREFIX paf: http://pir.georgetown.edu/pro/paf#
SELECT distinct ?DO_term ?disease ?PRO_term ?PRO_name WHERE { SERVICE https://sparql.proconsortium.org/virtuoso/sparql { ?x a rdf:Statement ; rdf:subject ?PRO_term ; rdf:predicate [ paf:relation "associated_with_disease_progression" ] ; rdf:object ?xo .
?xo paf:ontologyID ?doid . ?PRO_term paf:objectTerm ?PRO_name . } ?DO_term a owl:Class ; oboInOwl:id ?doid ; rdfs:label ?disease ; rdfs:subClassOf* obo:DOID_162 .
}
3. See error **Browser** Occurs with Chrome (117.0.5938.132) and Firefox (118.0.1).
Dear @allenbaron,
Thank you for alerting us to the issue. It is now working properly again.
Best regards, Darren Natale
Describe the issue PROs SPARQL service is not usable in federated queries (returns "Service unavailable") or at https://lod.proconsortium.org/yasgui.html (returns response time but without any results displayed).
To Reproduce Steps to reproduce the behavior:
For federated query:
PREFIX rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# PREFIX rdfs: http://www.w3.org/2000/01/rdf-schema# PREFIX owl: http://www.w3.org/2002/07/owl# PREFIX xsd: http://www.w3.org/2001/XMLSchema# PREFIX dc: http://purl.org/dc/elements/1.1/ PREFIX dcterms: http://purl.org/dc/terms/ PREFIX obo: http://purl.obolibrary.org/obo/ PREFIX oboInOwl: http://www.geneontology.org/formats/oboInOwl# PREFIX paf: http://pir.georgetown.edu/pro/paf#
SELECT distinct ?DO_term ?disease ?PRO_term ?PRO_name WHERE { SERVICE https://sparql.proconsortium.org/virtuoso/sparql { ?x a rdf:Statement ; rdf:subject ?PRO_term ; rdf:predicate [ paf:relation "associated_with_disease_progression" ] ; rdf:object ?xo .
}