nataled
commented
3 months ago - [x] BUG: terms that are in the between-releases version (pro_wv.obo) are failing to display properly. See https://proconsortium.org/cgi-bin/entry_pro?id=PR:000085768.
- [x] BUG: related to the above, the page linked to the OBO file display is blank.
- [x] BUG: related to the above, the link to GPI is missing.
- [x] BUG: hyperlinks to Reactome fail to include the full identifier. The links include only the part prior to the dash. See https://proconsortium.org/cgi-bin/entry_pro?id=PR_000046511 for example.
- [x] Complexes in the 'forms found in complexes' table are currently presented as a caret (^) delimited string that is consequently incorrectly linked. These should be separated into separate lines as is done for parents in the top table. See https://proconsortium.org/cgi-bin/entry_pro?id=PR:000025934/ for example. Can contrast against https://proconsortium.org/app/entry/PR:000025934/
- [x] Similar to the above, complexes in the 'forms found in complexes' table should have the name displayed. Same example as above.
- [x] Would be good to have each 'Parent' show, in additional to the identifier, the parent's name. Same example as above (and same comparison page) (ignore the missing parent from Julie's page; keep both of the identifiers and the names in your version).
- [x] In search results, obsolete terms are not linked. Each of these has potentially useful information for users, so the links should be there. Example: first entry on https://proconsortium.org/cgi-bin/textsearch_pro?query0=pombe&search.x=0&search.y=0&field0=ALLFLDS
- [x] In search results, please remove the Cytoscape link.
- [x] In the Functional Annotation table, in the first column showing the ID, the short label, and the proteoform, please put the short label on the same line as the ID to help facilitate readability.
- [x] In the Functional Annotation table, in the first column, please include the entire sentence from the definition that contains the proteoform, including the word "Example: " if present. NOTE: this might require a change in an upstream file produced by @hongzhanhuang. If so, please indicate which file so we can follow up. See https://proconsortium.org/cgi-bin/entry_pro?id=PR:000000507#annotation
- [x] In the Protein Forms table, keeping Compact View as default, please put the short label into a separate column after the name column.