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PSSUN / Rcirc

R language based circRNA visualization toolbox
GNU General Public License v3.0
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Error in TranslateCirc #7

Open z626093820 opened 1 year ago

z626093820 commented 1 year ago

out='/storage/zuozd/rcirc/test/out.bam' fastq='"/storage/zuozd/circcode/rice/ZH11_1_trans.fastq"' fastq="/storage/zuozd/circcode/rice/ZH11_1_trans.fastq" adapter="/storage/zuozd/circcode/rice/adapter_rice.fa" trimmomatic="/storage/zuozd/circcode/CircCode-master/requiredSoft/trimmomatic-0.38.jar" genome="/storage/zuozd/genome/oryza_sativa_Japonica/Oryza_sativa.IRGSP-1.0.dna.toplevel.fa" tmp='/storage/zuozd/rcirc/test/temp/temp.file' circgenome="/storage/zuozd/circcode/rice/osa_isoform.fasta" rRNA="/storage/zuozd/circcode/CircCode-master/test-ara/plant-rrna.fasta" TranslateCirc(out,fastq,adapter,trimmomatic,genome,tmp,circgenome,rRNA) Error in TranslateCirc(out, fastq, adapter, trimmomatic, genome, tmp, : 找不到对象'geneome' TranslateCirc(out,fastq,adapter,trimmomatic,genome,tmp,circgenome,rRNA) Error in TranslateCirc(out, fastq, adapter, trimmomatic, genome, tmp, : 找不到对象'geneome' TranslateCirc(out,fastq,adapter,trimmomatic,genome,tmp,circgenome,rRNA) Error in TranslateCirc(out, fastq, adapter, trimmomatic, genome, tmp, : 找不到对象'geneome'

请问这个问题怎么解决。谢谢！！！