PTB-MR / mrpro

MR image reconstruction and processing.
https://ptb-mr.github.io/mrpro/
Apache License 2.0
17 stars 2 forks source link

Add reduce_view #476

Closed fzimmermann89 closed 5 days ago

fzimmermann89 commented 3 weeks ago

Utility for reducing expanded/broadcasted dimensions in a view to singleton

github-actions[bot] commented 3 weeks ago

Coverage

Coverage Report
FileStmtsMissCoverMissing
src/mrpro/algorithms/csm
   inati.py24196%44
   walsh.py16194%34
src/mrpro/algorithms/dcf
   dcf_voronoi.py53492%15, 48–49, 76
src/mrpro/algorithms/optimizers
   adam.py20195%69
src/mrpro/algorithms/reconstruction
   DirectReconstruction.py281643%51–71, 85
   IterativeSENSEReconstruction.py13192%76
   Reconstruction.py502256%42, 54–56, 80–87, 104–113
   RegularizedIterativeSENSEReconstruction.py411759%96–100, 114–139
src/mrpro/data
   AcqInfo.py128298%174, 214
   CsmData.py29390%15, 82–84
   DcfData.py45882%18, 66, 78–83
   IData.py67987%119, 125, 129, 159–167
   IHeader.py75791%75, 109, 127–131
   KHeader.py1651790%25, 127–131, 158, 210, 221, 228–229, 232, 239, 278–289
   KNoise.py311552%39–52, 56–61
   KTrajectory.py69593%178–182
   MoveDataMixin.py1271886%15, 110, 126, 140–142, 203, 265–267, 280, 359, 379–380, 382, 397–398, 400
   QData.py39782%42, 65–73
   Rotation.py6743695%100, 198, 335, 433, 477, 495, 581, 583, 592, 626, 628, 691, 768, 773, 776, 791, 808, 813, 889, 1077, 1082, 1085, 1109, 1113, 1240, 1242, 1250–1251, 1315, 1397, 1608, 1690, 1846, 1881, 1885, 1996
   SpatialDimension.py2462391%34, 104, 119, 126, 132, 167, 177, 294–296, 309–311, 345, 363, 376, 389, 402, 415, 424–425, 440, 449
   TrajectoryDescription.py14193%23
   acq_filters.py10190%47
src/mrpro/data/_kdata
   KData.py1051685%108–109, 118, 126, 180–181, 216, 221–222, 241–252
   KDataRemoveOsMixin.py29293%44, 46
   KDataSelectMixin.py21290%48, 64
   KDataSplitMixin.py49394%51, 81, 90
src/mrpro/data/traj_calculators
   KTrajectoryCalculator.py25292%23, 45
   KTrajectoryIsmrmrd.py13285%41, 50
   KTrajectoryPulseq.py29197%54
src/mrpro/operators
   CartesianSamplingOp.py50492%49–50, 90, 116
   ConstraintsOp.py60297%46, 48
   EndomorphOperator.py65297%228, 234
   FiniteDifferenceOp.py27293%40, 105
   FourierOp.py77199%131
   Functional.py71593%20–22, 117, 119
   GridSamplingOp.py136993%72–73, 82–83, 90–91, 94, 96, 98
   LinearOperator.py1711293%55, 91, 190, 220, 261, 270, 278, 287, 295, 320, 418, 423
   LinearOperatorMatrix.py1581690%82, 119, 152, 161, 166, 175–178, 191–194, 203, 215, 304, 331, 359
   MultiIdentityOp.py13285%43, 48
   Operator.py78297%25, 74
   ProximableFunctionalSeparableSum.py39392%50, 103, 110
   SliceProjectionOp.py173895%44, 61, 63, 69, 206, 227, 260, 300
   WaveletOp.py120596%152, 170, 205, 210, 233
   ZeroPadOp.py16194%30
src/mrpro/utils
   filters.py62297%44, 49
   modify_acq_info.py17194%12
   slice_profiles.py46687%20, 36, 113–116, 149
   sliding_window.py34197%34
   split_idx.py10280%43, 47
   summarize_tensorvalues.py11918%20–29
   typing.py181139%8–23
   zero_pad_or_crop.py31681%26, 30, 54, 57, 60, 63
TOTAL474435593% 

Tests Skipped Failures Errors Time
1953 0 :zzz: 0 :x: 0 :fire: 1m 39s :stopwatch:
github-actions[bot] commented 3 weeks ago

:books: Documentation

:file_folder: Download as zip :mag: View online

fzimmermann89 commented 3 weeks ago

(open to name or docstring changes)

fzimmermann89 commented 2 weeks ago

@ckolbPTB @schuenke can you review this? Or should I close it and try to get it into the indexing pr-stack? I thought initially, it could be easier without using ghstack, but I lose track which commits I need to get stuff to work... So this PR and #484 are logically kind-of parts of the stack starting at #488...