Myst

[github-actions[bot]]

Coverage Report

File	Stmts	Miss	Cover	Missing
src/mrpro/algorithms/csm
inati.py	24	1	96%	44
walsh.py	16	1	94%	34
src/mrpro/algorithms/dcf
dcf_voronoi.py	53	4	92%	15, 48–49, 76
src/mrpro/algorithms/optimizers
adam.py	20	1	95%	69
src/mrpro/algorithms/reconstruction
DirectReconstruction.py	28	16	43%	51–71, 85
IterativeSENSEReconstruction.py	42	23	45%	77–78, 88–98, 113–124, 138–149
Reconstruction.py	52	24	54%	42, 54–56, 80–87, 104–115
src/mrpro/data
AcqInfo.py	128	2	98%	174, 214
CsmData.py	29	3	90%	15, 82–84
DcfData.py	45	8	82%	18, 66, 78–83
IData.py	67	9	87%	119, 125, 129, 159–167
IHeader.py	75	7	91%	75, 109, 127–131
KHeader.py	165	17	90%	25, 127–131, 158, 210, 221, 228–229, 232, 239, 278–289
KNoise.py	31	15	52%	39–52, 56–61
KTrajectory.py	69	5	93%	178–182
MoveDataMixin.py	127	18	86%	15, 110, 126, 140–142, 203, 265–267, 280, 359, 379–380, 382, 397–398, 400
QData.py	39	7	82%	42, 65–73
Rotation.py	674	36	95%	100, 198, 335, 433, 477, 495, 581, 583, 592, 626, 628, 691, 768, 773, 776, 791, 808, 813, 889, 1077, 1082, 1085, 1109, 1113, 1240, 1242, 1250–1251, 1315, 1397, 1608, 1690, 1846, 1881, 1885, 1996
SpatialDimension.py	246	23	91%	34, 104, 119, 126, 132, 167, 177, 294–296, 309–311, 345, 363, 376, 389, 402, 415, 424–425, 440, 449
TrajectoryDescription.py	14	1	93%	23
acq_filters.py	10	1	90%	47
src/mrpro/data/_kdata
KData.py	105	16	85%	108–109, 118, 126, 180–181, 216, 221–222, 241–252
KDataRemoveOsMixin.py	29	2	93%	44, 46
KDataSelectMixin.py	21	2	90%	48, 64
KDataSplitMixin.py	49	3	94%	51, 81, 90
src/mrpro/data/traj_calculators
KTrajectoryCalculator.py	25	2	92%	23, 45
KTrajectoryIsmrmrd.py	13	2	85%	41, 50
KTrajectoryPulseq.py	29	1	97%	54
src/mrpro/operators
CartesianSamplingOp.py	50	9	82%	49–50, 55–56, 61–62, 88, 91, 114
ConstraintsOp.py	60	2	97%	46, 48
EndomorphOperator.py	65	2	97%	228, 234
FiniteDifferenceOp.py	27	2	93%	40, 105
FourierOp.py	77	1	99%	131
Functional.py	71	5	93%	20–22, 117, 119
GridSamplingOp.py	136	9	93%	72–73, 82–83, 90–91, 94, 96, 98
LinearOperator.py	161	12	93%	55, 91, 190, 220, 261, 270, 278, 287, 295, 306, 404, 409
MultiIdentityOp.py	13	2	85%	43, 48
Operator.py	78	2	97%	25, 74
ProximableFunctionalSeparableSum.py	39	3	92%	50, 103, 110
SliceProjectionOp.py	173	8	95%	44, 61, 63, 69, 206, 227, 260, 300
WaveletOp.py	120	5	96%	152, 170, 205, 210, 233
ZeroPadOp.py	16	1	94%	30
src/mrpro/utils
filters.py	62	2	97%	44, 49
modify_acq_info.py	17	1	94%	12
slice_profiles.py	46	6	87%	20, 36, 113–116, 149
sliding_window.py	34	1	97%	34
split_idx.py	10	2	80%	43, 47
summarize_tensorvalues.py	11	9	18%	20–29
typing.py	18	11	39%	8–23
zero_pad_or_crop.py	31	6	81%	26, 30, 54, 57, 60, 63
TOTAL	4530	351	92%

Tests	Skipped	Failures	Errors	Time
1916	0 :zzz:	0 :x:	0 :fire:	1m 40s :stopwatch:

[github-actions[bot]]

Coverage Report

File	Stmts	Miss	Cover	Missing
src/mrpro/algorithms/csm
inati.py	24	1	96%	44
walsh.py	16	1	94%	34
src/mrpro/algorithms/dcf
dcf_voronoi.py	53	4	92%	15, 48–49, 76
src/mrpro/algorithms/optimizers
adam.py	20	1	95%	69
src/mrpro/algorithms/reconstruction
DirectReconstruction.py	28	16	43%	51–71, 85
IterativeSENSEReconstruction.py	42	23	45%	77–78, 88–98, 113–124, 138–149
Reconstruction.py	52	24	54%	42, 54–56, 80–87, 104–115
src/mrpro/data
AcqInfo.py	128	2	98%	174, 214
CsmData.py	29	3	90%	15, 82–84
DcfData.py	45	8	82%	18, 66, 78–83
IData.py	67	9	87%	119, 125, 129, 159–167
IHeader.py	75	7	91%	75, 109, 127–131
KHeader.py	165	17	90%	25, 127–131, 158, 210, 221, 228–229, 232, 239, 278–289
KNoise.py	31	15	52%	39–52, 56–61
KTrajectory.py	69	5	93%	178–182
MoveDataMixin.py	127	18	86%	15, 110, 126, 140–142, 203, 265–267, 280, 359, 379–380, 382, 397–398, 400
QData.py	39	7	82%	42, 65–73
Rotation.py	674	36	95%	100, 198, 335, 433, 477, 495, 581, 583, 592, 626, 628, 691, 768, 773, 776, 791, 808, 813, 889, 1077, 1082, 1085, 1109, 1113, 1240, 1242, 1250–1251, 1315, 1397, 1608, 1690, 1846, 1881, 1885, 1996
SpatialDimension.py	246	23	91%	34, 104, 119, 126, 132, 167, 177, 294–296, 309–311, 345, 363, 376, 389, 402, 415, 424–425, 440, 449
TrajectoryDescription.py	14	1	93%	23
acq_filters.py	10	1	90%	47
src/mrpro/data/_kdata
KData.py	105	16	85%	108–109, 118, 126, 180–181, 216, 221–222, 241–252
KDataRemoveOsMixin.py	29	2	93%	44, 46
KDataSelectMixin.py	21	2	90%	48, 64
KDataSplitMixin.py	49	3	94%	51, 81, 90
src/mrpro/data/traj_calculators
KTrajectoryCalculator.py	25	2	92%	23, 45
KTrajectoryIsmrmrd.py	13	2	85%	41, 50
KTrajectoryPulseq.py	29	1	97%	54
src/mrpro/operators
CartesianSamplingOp.py	50	9	82%	49–50, 55–56, 61–62, 88, 91, 114
ConstraintsOp.py	60	2	97%	46, 48
EndomorphOperator.py	65	2	97%	228, 234
FiniteDifferenceOp.py	27	2	93%	40, 105
FourierOp.py	77	1	99%	131
Functional.py	71	5	93%	20–22, 117, 119
GridSamplingOp.py	136	9	93%	72–73, 82–83, 90–91, 94, 96, 98
LinearOperator.py	161	12	93%	55, 91, 190, 220, 261, 270, 278, 287, 295, 306, 404, 409
MultiIdentityOp.py	13	2	85%	43, 48
Operator.py	78	2	97%	25, 74
ProximableFunctionalSeparableSum.py	39	3	92%	50, 103, 110
SliceProjectionOp.py	173	8	95%	44, 61, 63, 69, 206, 227, 260, 300
WaveletOp.py	120	5	96%	152, 170, 205, 210, 233
ZeroPadOp.py	16	1	94%	30
src/mrpro/utils
filters.py	62	2	97%	44, 49
modify_acq_info.py	17	1	94%	12
slice_profiles.py	46	6	87%	20, 36, 113–116, 149
sliding_window.py	34	1	97%	34
split_idx.py	10	2	80%	43, 47
summarize_tensorvalues.py	11	9	18%	20–29
typing.py	18	11	39%	8–23
zero_pad_or_crop.py	31	6	81%	26, 30, 54, 57, 60, 63
TOTAL	4530	351	92%

Tests	Skipped	Failures	Errors	Time
1916	0 :zzz:	0 :x:	0 :fire:	1m 22s :stopwatch:

[github-actions[bot]]

:books: Documentation

:file_folder: Download as zip :mag: View online

[lrlunin]

Wow, that looks great. The only one small detail (possibly very annoying) is that \( ... \) commands not always rendered perfectly if any notebook (except the 1st or 3d one) in "Example" is chosen:

The 1st or 3d:

Tested both on Firefox and Chrome last versions. I believe it's a nb-myst issue. So we can use it and wait when they'll fix it.

P.S. I could not even think that there is an alternative for nbsphinx. Thanks you very much for your research!

[fzimmermann89]

For now, I would just use T1 and T2* in the h1 header and title.

[fzimmermann89]

and it should be fixed @lrlunin