PYangLab / PhosR

PhosR is a package for the comprehensive analysis of phosphoproteomic data.
https://pyanglab.github.io/PhosR/
GNU General Public License v3.0
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I have a question for Step 4: Identifying stably phosphorylated sites and Step 5: Normalization and batch correction of data sets #17

Open xiaocong3333 opened 5 months ago

xiaocong3333 commented 5 months ago

I have a question for Step 4: Identifying stably phosphorylated sites and Step 5: Normalization and batch correction of data sets, as all my data are from a batch, having 4 control, 4 Exp, so in theory, I don't have batch effct. So do I still need to do these two steps, and if I do, I don't have other data to find the stably phosphorylated sites, could I use your dem three data sets to find the SPS?