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PYangLab / PhosR

PhosR is a package for the comprehensive analysis of phosphoproteomic data.
https://pyanglab.github.io/PhosR/
GNU General Public License v3.0
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PDF format heatmap from kinaseSubstrateHeatmap function. #4

Closed IgnatiusPang closed 2 years ago

IgnatiusPang commented 3 years ago

I have tried to capture the heatmap from kinaseSubstrateHeatmap function but it did not work for me in the iPython notebook. Would it be possible to add in the function the option to input a file name (with PDF or JPG suffix) that will be passed onto the pheatmap function when I want the heatmap saved in a file? Currently, the heatmap is only printed onto the notebook in my iPython/Jupyter notebook.

HaniJieunKim commented 2 years ago

Hi Iggy,

Apologies for the delay. We have updated the kinaseSubstrateHeatmap so that the user can specify the filename wherein the image can be saved.

Please see our update here.

Many thanks, Hani