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PYangLab / PhosR_STAR_Protocols

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PhosphoSite.mouse missing? #3

Open IgnatiusPang opened 3 years ago

IgnatiusPang commented 3 years ago

After running:

data("KinaseMotifs") head(PhosphoSite.mouse)

I have got the following error:

Error in head(PhosphoSite.mouse) : object 'PhosphoSite.mouse' not found

Emilie3467 commented 2 years ago

Dear @IgnatiusPang,

I got the same issue. While I wish you had solved this, here is the solution (which worked for me at least):

data(PhosphoSitePlus) head(PhosphoSite.mouse) data("KinaseMotifs") seqs <- ppe@Sequence[idx] kssMat <- kinaseSubstrateScore(substrate.list = PhosphoSite.mouse, mat = mat.std, seqs = seqs, numMotif = 5, numSub = 1, verbose = FALSE)