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PacificBiosciences / ANGEL

Robust Open Reading Frame prediction (ANGLE re-implementation)
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ANGEL intermidiate files clean up #22

Closed aksenia closed 5 years ago

aksenia commented 5 years ago

Hi Liz,

This is not really an issue, but I would like to double check one thing about angel run. I run successfully all steps and in the last step the script finished with: "Closing Pool.... Joining Pool.... All workers completed. Output written to data.ANGEL.cds, data.ANGEL.pep, data.ANGEL.utr " But in the angel folder I see a bunch of intermidiate files that were not deleted - 176 data.split*.fa and data.splitfa.ANGEL, data.split_fa.ANGEL.DONE. There are also files data.ANGEL.cds, data.ANGEL.pep, data.ANGEL.utr which I take is a final output. I wonder whether it is normal that the intermidiate files are not deleted? Since the tool run for a while I do not feel like deleting them in case if it means the run is incomplete.

Best Ksenia

Magdoll commented 5 years ago

HI @aksenia ,

The intermediate file clean up was previously commented out. See the last lines in SmartORF.py.

I can check in a version later that has those lines uncommented. You can also uncomment them and recompile.

--Liz

Magdoll commented 5 years ago

Intermediate files are now cleaned up in v2.7. Closing issue.