Magdoll
commented
4 years ago Hi @yy-liang , Oh my bad! The trained classifier pickles need to be updated for Python 3 version. Please don't use them for now. I am going to remove them from the GItHub in the meantime until a new one is up.
Hi @Magdoll, I'm running the ANGEL v3.0 with the example data and I got the following error:
$angel_predict.py test.fa MCF7_2015.dumb.final.training.pickle test_angel Reading classifer pickle: MCF7_2015.dumb.final.training.pickle /root/anaconda3/envs/py37/lib/python3.7/site-packages/sklearn/utils/deprecation.py:143: FutureWarning: The sklearn.ensemble.weight_boosting module is deprecated in version 0.22 and will be removed in version 0.24. The corresponding classes / functions should instead be imported from sklearn.ensemble. Anything that cannot be imported from sklearn.ensemble is now part of the private API. warnings.warn(message, FutureWarning) /root/anaconda3/envs/py37/lib/python3.7/site-packages/sklearn/utils/deprecation.py:143: FutureWarning: The sklearn.tree.tree module is deprecated in version 0.22 and will be removed in version 0.24. The corresponding classes / functions should instead be imported from sklearn.tree. Anything that cannot be imported from sklearn.tree is now part of the private API. warnings.warn(message, FutureWarning) Traceback (most recent call last): File "/root/ANGEL/angel_predict.py", line 22, in <module> distribute_ANGEL_predict(args.fasta_filename, args.output_prefix, args.classifier_pickle, args.cpus, args.min_angel_aa_length, args.min_dumb_aa_length, args.use_rev_strand, args.output_mode, args.max_angel_secondORF_distance) File "/root/anaconda3/envs/py37/lib/python3.7/site-packages/Angel-3.0-py3.7-linux-x86_64.egg/Angel/SmartORF.py", line 254, in distribute_ANGEL_predict a = load(f) UnicodeDecodeError: 'ascii' codec can't decode byte 0x81 in position 1: ordinal not in range(128).Any advice will be appreciated.