pb-cdunn
commented
6 years ago The lfs warning is fine. We have huge slow-downs on LFS when we do not set the stripe, so we want to know. Since you are not on LFS, it's harmless.
The ConfigParser means you need to supply sge_option_da in your fc_run.cfg. (Possibly that example needs to be updated.)
Hello,I run falcon on my server and following error occured. And, If I only want to run error-correct step, how should I use?thanks python FALCON/src/py_scripts/fc_run.py FALCON-integrate/FALCON-examples/run/ecoli2/fc_run.cfg [19705]$('lfs setstripe -c 12 FALCON-integrate') sh: 1: lfs: not found [19705]WARNING: Call 'lfs setstripe -c 12 FALCON-integrate' returned 32512. [INFO]Setup logging from file "None". [INFO]fc_run started with configuration FALCON-integrate/FALCON-examples/run/ecoli2/fc_run.cfg [ERROR]Failed to parse config "FALCON-integrate/FALCON-examples/run/ecoli2/fc_run.cfg". Traceback (most recent call last): File "FALCON-integrate/FALCON/falcon_kit/mains/run1.py", line 132, in main1 support.parse_config(input_config_fn)) File "FALCON-integrate/FALCON/falcon_kit/run_support.py", line 161, in get_dict_from_old_falcon_cfg sge_option = config.get(section, 'sge_option_da') File "miniconda2/lib/python2.7/ConfigParser.py", line 618, in get raise NoOptionError(option, section) NoOptionError: No option 'sge_option_da' in section: 'General' Traceback (most recent call last): File "FALCON/src/py_scripts/fc_run.py", line 5, in
main(sys.argv)
File "FALCON-integrate/FALCON/falcon_kit/mains/run1.py", line 504, in main
main1(argv[0], args.config, args.logger)
File "FALCON-integrate/FALCON/falcon_kit/mains/run1.py", line 132, in main1
support.parse_config(input_config_fn))
File "FALCON-integrate/FALCON/falcon_kit/run_support.py", line 161, in get_dict_from_old_falcon_cfg
sge_option = config.get(section, 'sge_option_da')
File "miniconda2/lib/python2.7/ConfigParser.py", line 618, in get
raise NoOptionError(option, section)
ConfigParser.NoOptionError: No option 'sge_option_da' in section: 'General'