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PacificBiosciences / FALCON-integrate

Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
https://github.com/PacificBiosciences/FALCON/wiki/Manual
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Where is falcon-unzip? #177

Closed yangwu91 closed 6 years ago

yangwu91 commented 6 years ago

Hi, It looks like falcon-unzip was not integrated since Version 1.8.6, and the latest FALCON-integrate results couldn't be fed to falcon-unzip. If I want to use falcon-unzip, do I have to install FALCON-intergrate V1.8.5? Thanks!

cgjosephlee commented 6 years ago

http://pb-falcon.readthedocs.io/en/latest/quick_start.html

This bundle also carries a prebuilt falcon distribution, but I guess it's not the latest (v2.1.4).

pb-cdunn commented 6 years ago

https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

If I want to use falcon-unzip, do I have to install FALCON-intergrate V1.8.5?

Not anymore. But I highly recommend trying FALCON-examples:

cd FALCON-examples
cd run/synth0
git-sym .
make
cd ../greg200k-sv2
# edit *.cfg
make falcon
make unzip

Fast test-cases are helpful in solving integration problems.