running falcon and falcon_unzip with HiFi reads

PacificBiosciences / FALCON-integrate

Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

https://github.com/PacificBiosciences/FALCON/wiki/Manual

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running falcon and falcon_unzip with HiFi reads #194

Closed sjin09 closed 5 years ago

sjin09 commented 5 years ago

To whom it may concern,

I am attempting to run falcon and falcon_unzip through pb-assembly. The fasta header of CCS/HiFi reads does not seem to be compatible with the daligner that is installed together with pb-assembly. I was wondering when PacBio might push an update for pb-assembly that would run with the HiFI reads.

Regards, Sangjin Lee

pb-cdunn commented 5 years ago

We'll take care of that with a special Unzip workflow update, to be released this week.