Open chklopp opened 8 years ago
No yet. The data is stored in the daligner's database. It needs some simple scripts to get the information. We will add some tool when we release the fully diploid haplotig separation code FALCON-Unzip
.
Jason, This actually got worse last Friday, when I fixed something for Ben Lerch. In pbsmrtpipe, when we combine .bam
reads into a single .fasta
, fasta2DB quits because the "movie" names are not consistent. Until I have time to separate movies into different fasta files, I have added the -p MOVIENAME
flag to fasta2DB. So we cannot even match dazzlerdb data back to the reads anymore.
Internal link:
Understood. It just more tedious for downstream code to take the responsibility if we don't get it easier from the upstream.
Sent from my iPhone
On Jan 11, 2016, at 8:17 AM, Christopher Dunn notifications@github.com<mailto:notifications@github.com> wrote:
Jason, This actually got worse last Friday, when I fixed something for Ben Lerch. In pbsmrtpipe, when we combine .bam reads into a single .fasta, fasta2DB quits because the "movie" names are not consistent. Until I have time to separate movies into different fasta files, I have added the -p MOVIENAME flag to fasta2DB. So we cannot even match dazzlerdb data back to the reads anymore.
Internal link:
— Reply to this email directly or view it on GitHubhttps://github.com/PacificBiosciences/FALCON/issues/258#issuecomment-170601172.
Hi,
Could Falcon produce a file linking input and output (corrected) read names?
Cheers,
Christophe