question: how to shut off debugging messages from pypeflow to pypeflow.log

PacificBiosciences / FALCON

FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

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question: how to shut off debugging messages from pypeflow to pypeflow.log #270

Open dgordon562 opened 8 years ago

dgordon562 commented 8 years ago

pypeflow.log is HUGE (10's of GB).

Chris--sorry for the bother, we probably should be able to dig this out of the pypeflow documentation, but if you know right off how to do this, it could save us a lot of time?

Thanks! David

pb-cdunn commented 8 years ago

That's simple.

fc_run.py fc_run.cfg logging.ini

You can find a sample logging.ini in FALCON-examples. It's standard Python logging:

https://docs.python.org/2/library/logging.config.html#configuration-file-format
https://github.com/pb-cdunn/FALCON-examples/blob/master/logging.ini

I recommend testing via FALCON-examples/run/synth0 first. That's a super-fast test-case.

pb-cdunn commented 8 years ago

Go Seahawks! :football: