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PacificBiosciences / FALCON

FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
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falcon_unzip result #675

Closed lijingjing1 closed 5 years ago

lijingjing1 commented 5 years ago

I test falcon unzip version fc_env_181016 on my own pacbio data about genome size 550 mb.

i get two questions about the unzip result.

1.in floder 3-unzip all_p_ctg.fa and all_h_ctg.fa file size vary considerably.in my opinions the all_h_ctg.fa and the all_p_ctg.fa should have the similar size like the test data greg200k-sv2.

image

2.in floder 3-unzip file all_p_ctg.fa have the similar id and similar sequence like this.

000678Fp01 、000678Fp02 and how to understand this p01 and p02.

image

Do you have any some idea about this two questions？

pb-cdunn commented 5 years ago
  1. p_ctg can be much bigger. (greg200k-sv2 is very artificial, only for testing the workflow.)
  2. p01 and p02 -- you should update your code. We have made some changes there.