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PacificBiosciences
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FALCON
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
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2018.08.31 binaries LAcheck duplicate in tan-runs
#670
jasmynp
closed
5 years ago
6
falcon_kit.mains.ovlp_to_graph fails to produce c_path files
#669
fayina
closed
6 years ago
3
daligner_p Segmentation fault
#668
xinwang-bio
closed
5 years ago
2
Cluster renting
#667
mictadlo
opened
6 years ago
0
tan-runs cannot find build/raw_reads.db under tan-chunks
#666
jasmynp
closed
6 years ago
4
Error correction with Illumina
#665
mictadlo
opened
6 years ago
2
help with SLURM config for fs_based, sbatch
#664
jasmynp
closed
6 years ago
14
Running Falcon locally, with large genomes
#663
bernardo1963
closed
6 years ago
7
MissingLas: 76728 is not a perfect square. We must be missing some .las files.
#662
roylejw
closed
6 years ago
1
Unable to complete Falcon test run: fc_run fails to parse config file
#661
ggstatgen
closed
6 years ago
2
Exception: Some tasks are recently_done but not satisfied Node0-rawreads/daligner-runs
#660
aechchiki
closed
5 years ago
5
Regarding Filtering Synthetic construct PacBio
#659
harsh-shukla
closed
6 years ago
2
Examples of up-to-date cfg files for FALCON?
#658
apredeus
closed
6 years ago
22
Error running Falcon unzip
#657
ghannum
closed
6 years ago
1
Using PacBio and Nanopore data together?
#656
apredeus
closed
6 years ago
1
issue with slurm
#655
fmarletaz
closed
6 years ago
2
Estimation of free disc space needed?
#654
alslonik
closed
6 years ago
1
Problem with restarting
#653
gengyuncong
closed
6 years ago
1
Assertion error running Falcon unzip
#652
ghannum
closed
6 years ago
2
How to set tmpDir of pbalign when running fc_quiver
#651
phillip-mcclurg-driscolls
opened
6 years ago
2
falcon_unzip failed at 3-unzip/2-htigs/chunk_000***F
#650
whc2
closed
6 years ago
3
Falcon vs Falcon-integrate
#649
alslonik
closed
6 years ago
1
number of concurrent jobs fixed to 8
#648
gengyuncong
closed
6 years ago
2
[Exception: Call 'which samtools' returned 256] on install
#647
conchoecia
opened
6 years ago
1
Only 21 jobs are performed out of 60 Daligner jobs and the run fails w/o ERROR
#646
alslonik
closed
6 years ago
2
[ERROR]Task Node(0-rawreads) failed with exit-code=256
#645
yhsYhsYhs
opened
6 years ago
1
config settings
#644
gbdias
opened
6 years ago
1
Falcon Unzip [ERROR]Task Node(3-unzip/reads) failed with exit-code=256
#643
sebastianevda
closed
6 years ago
1
falcon-unzip "hanging" with no output
#642
cschu
closed
6 years ago
1
Reporting tool version, e.g. fc_run.py -v or --version
#641
peterjc
opened
6 years ago
2
too many arguments for format string
#640
peterjc
opened
6 years ago
4
Large genomes
#639
iggyB
closed
6 years ago
1
unzip is failing due to incorrect nucmer option
#638
rob123king
closed
6 years ago
2
Unclear release information
#637
peterjc
closed
6 years ago
3
missing reads.fa files during unzip
#636
rob123king
closed
6 years ago
5
high heterozygous genome
#635
yplee614
closed
6 years ago
3
[37876]$(u'lfs setstripe -c 12 /home/user')
#634
guoqiangzh001
opened
6 years ago
3
ValueError: ("Expected ',' or end-of-list in", 'falcon-kit==1.0+git.6bb3daa96931aece9bd3742bccc77ad257b7bb65', 'at', '+git.6bb3daa96931aece9bd3742bccc77ad257b7bb65')
#633
zingdle
closed
6 years ago
1
Problems with trying to assemble corrected sequences in FALCON
#632
ruthfa
closed
6 years ago
19
Some 0-rawreads jobs failing with ERROR 256 and "Too many alignment records"
#631
cschu
closed
6 years ago
1
Task Node(0-rawreads) failed with exit-code=256
#630
AlexYang01
closed
6 years ago
1
falcon unzip assembly input after quickmerge
#629
rob123king
closed
6 years ago
0
What to put into input.fofn for FALCON-unzip
#628
LukeManship
closed
6 years ago
2
setting tmpdir
#627
rob123king
closed
6 years ago
1
`get_cns_from_align_tags` may lose the first base in falcon.c:519 (@05ed6fa)
#626
lemene
closed
6 years ago
4
Fix g_ck_best
#625
cschin
closed
6 years ago
1
"g_best_ck" may be misused in falcon.c:494 (@09a8b7b)
#624
lemene
closed
5 years ago
5
Difference between /2-asm-falcon/p_ctg.fa and /2-asm-falcon/proper/p_ctg.fa
#623
uceleste
closed
6 years ago
1
use FALCON in PBS grid
#622
tangerzhang
closed
6 years ago
3
Losing most of my coverage in preads
#621
rob123king
closed
6 years ago
3
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