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PacificBiosciences / FALCON_unzip

Making diploid assembly becomes common practice for genomic study
BSD 3-Clause Clear License
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Falcon outputs to Falcon_unzip #113

Closed Jeff-Liu9453 closed 6 years ago

Jeff-Liu9453 commented 6 years ago

Dear PacBio team, I run Falcon and get aassembly genome with 548 contigs and I change some criteria of "run_falcon_asm.sh" then rerun it in 2-asm-falcon folder to get better assembly genome result(614contigs). Then I run falcon_unzip but result look like that falcon_unzip use old data from falcon because they only contain 540 contigs in all_p_ctg.fa . I also found that in 3-unzip/reads/ctg_list only contain 548 contigs name. Is there a way to fix it? Thank you. Best, Jeff

pb-cdunn commented 6 years ago

You have to run unzip from a binary release. (And run falcon from the same binary, so you have consistent versions.)

jasmynp commented 6 years ago

Do you know what version of falcon is available in the binaries? Is it falcon/2.1.4?

I'm testing it out and this is the first time I've seen it look for the directory 0-rawreads/las-gather.