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PacificBiosciences / FALCON_unzip

Making diploid assembly becomes common practice for genomic study
BSD 3-Clause Clear License
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unzip 1-hasm phased_ovlp_to_graph Error #114

Closed nottwy closed 6 years ago

nottwy commented 6 years ago

Dear developer,

I was running falcon-unzip and encountered this problem:

python -m falcon_unzip.mains.phased_ovlp_to_graph preads.p_ovl --min_len 2500 > fc.log ++ python -m falcon_unzip.mains.phased_ovlp_to_graph preads.p_ovl --min_len 2500 Traceback (most recent call last): File "/home/xxyi/bin/python-2.7.13/lib/python2.7/runpy.py", line 174, in _run_module_as_main "main", fname, loader, pkg_name) File "/home/xxyi/bin/python-2.7.13/lib/python2.7/runpy.py", line 72, in _run_code exec code in run_globals File "/scratch/cdunn/fork/.git/LOCAL2/lib/python2.7/site-packages/falcon_unzip/mains/phased_ovlp_to_graph.py", line 1538, in File "/scratch/cdunn/fork/.git/LOCAL2/lib/python2.7/site-packages/falcon_unzip/mains/phased_ovlp_to_graph.py", line 1534, in main File "/scratch/cdunn/fork/.git/LOCAL2/lib/python2.7/site-packages/falcon_unzip/mains/phased_ovlp_to_graph.py", line 1339, in run File "/home/xxyi/bin/FALCON-integrate/fc_env_180307/lib/python2.7/site-packages/networkx/classes/multidigraph.py", line 395, in remove_edge "The edge %s-%s is not in the graph." % (u, v)) networkx.exception.NetworkXError: The edge 016034391:E-001041662:E is not in the graph.

Could you give me a solution? 3ku.

nottwy commented 6 years ago

@pb-jchin ,could you please just give me some advice about how to solve it? 3ku

pb-cdunn commented 6 years ago

If you start over with the latest binary release, we might be able to help you.