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PacificBiosciences / FALCON_unzip

Making diploid assembly becomes common practice for genomic study
BSD 3-Clause Clear License
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Running FALCON and FALCON_UNZIP on different clusters #147

Closed bostanict closed 5 years ago

bostanict commented 5 years ago

Hi,

Due to some reasons I have run the falcon assembler on one cluster and got the results but I am not able to run the unzip on it on the same cluster. I want to know if I want to run the unzip on the assembled genome using another cluster, what folders and files I need on the destination machine to make it happen?

I know unzip uses a lot of pre-computed files etc. from falcon assembly step (https://github.com/PacificBiosciences/FALCON_unzip/issues/100), but since the files and directories generated are huge, and transferring them will take a long time and sometimes even not possible, I want to make sure what the essential files are and skip the others if possible.

Thanks for any guidance,

pb-cdunn commented 5 years ago

You need a lot of the .las files, which account of most of the disk-space, so basically you are best off just copying the entire tree to the other cluster.