search

PacificBiosciences / FALCON_unzip

Making diploid assembly becomes common practice for genomic study
BSD 3-Clause Clear License
30 stars 18 forks source link

Blasr : terminate called after throwing an instance of 'std::runtime_error' #149

Open anu24s opened 5 years ago

anu24s commented 5 years ago

Hi,,, when I am trying to run Blasr-1.3.1 , I get the following error

[INFO] 2019-05-23T11:14:06 [blasr] started. terminate called after throwing an instance of 'std::runtime_error' what(): SamWriter: could not write record Aborted (core dumped)

can anyone help me out on this??

pb-cdunn commented 5 years ago

Hmmm. If you're using Bioconda, try conda update --all. There is only one place now where Blasr is still used, and we have not seen this error. Try going into the run-directory where this happens and look for a stderr file.

(I might not respond again. I just happened to be checking something and noticed this. Good luck!)