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PacificBiosciences / FALCON_unzip

Making diploid assembly becomes common practice for genomic study
BSD 3-Clause Clear License
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ImportError: This package should not be accessible on Python 3. #164

Open ymatmt opened 4 years ago

ymatmt commented 4 years ago

I got error about fc_run so please help. At first I got following error in the stderr file in the 0-rawreads folder,

… /home/asm/hdd/software/falcon/fc_env_200910/bin/python: Error while finding module specification for 'falcon_kit.mains.build_rdb' (ModuleNotFoundError: No module named 'falcon_kit') …

then I found following solution at https://github.com/PacificBiosciences/FALCON_unzip/issues/49, and then I change the PYTHONPATH to "/home/asm/hdd/software/falcon/fc_env_200910/lib"

However I found different error message, like

… File "/home/asm/hdd/software/falcon/fc_env_200910/lib/python2.7/site-packages/reprlib/init.py", line 7, in raise ImportError('This package should not be accessible on Python 3. ' ImportError: This package should not be accessible on Python 3. Either you are trying to run from the python-future src folder or your installation of python-future is corrupted. …

What can I do in the next step to run falcon successfully.

Please help!

pb-cdunn commented 4 years ago

I don't know what reprlib is. But I think you need python3 for falcon.