Compatibility question

[mahulchak]

Is falcon_unzip incompatible with smrtanalysis versions prior to 3.0? I'm using 2.3.0p5 and the scripts for.blasr readmapping are not working properly. I can give you more details if needed. Thanks.

[pb-jchin]

No. FALCON_unzip uses bam file (instead of hdf5 file base) based consensus pipeline which only exists after 3.0.

[mahulchak]

I see. I will install the new version and try again.

On Fri, Nov 4, 2016 at 4:02 PM Jason Chin notifications@github.com wrote:

No. FALCON_unzip uses bam file (instead of hdf5 file base) based consensus pipeline which only exists after 3.0.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/PacificBiosciences/FALCON_unzip/issues/41#issuecomment-258567515, or mute the thread https://github.com/notifications/unsubscribe-auth/AHMD6OFXRisXSyxYVppkd-C2l4rQQgl_ks5q67hIgaJpZM4KpSYF . {"api_version":"1.0","publisher":{"api_key":"05dde50f1d1a384dd78767c55493e4bb","name":"GitHub"},"entity":{"external_key":"github/PacificBiosciences/FALCON_unzip","title":"PacificBiosciences/FALCON_unzip","subtitle":"GitHub repository","main_image_url":" https://cloud.githubusercontent.com/assets/143418/17495839/a5054eac-5d88-11e6-95fc-7290892c7bb5.png ","avatar_image_url":" https://cloud.githubusercontent.com/assets/143418/15842166/7c72db34-2c0b-11e6-9aed-b52498112777.png","action":{"name":"Open in GitHub","url":"https://github.com/PacificBiosciences/FALCON_unzip"}},"updates":{"snippets":[{"icon":"PERSON","message":"@pb-jchin in #41: No. FALCON_unzip uses bam file (instead of hdf5 file base) based consensus pipeline which only exists after 3.0. "}],"action":{"name":"View Issue","url":" https://github.com/PacificBiosciences/FALCON_unzip/issues/41#issuecomment-258567515 "}}}

[mahulchak]

Is v3.0 available for download? I can find 2.3.0 but not any version after that. Thanks.

On Fri, Nov 4, 2016 at 4:21 PM mahul chakraborty mahulchak@gmail.com wrote:

I see. I will install the new version and try again.

On Fri, Nov 4, 2016 at 4:02 PM Jason Chin notifications@github.com wrote:

No. FALCON_unzip uses bam file (instead of hdf5 file base) based consensus pipeline which only exists after 3.0.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/PacificBiosciences/FALCON_unzip/issues/41#issuecomment-258567515, or mute the thread https://github.com/notifications/unsubscribe-auth/AHMD6OFXRisXSyxYVppkd-C2l4rQQgl_ks5q67hIgaJpZM4KpSYF . {"api_version":"1.0","publisher":{"api_key":"05dde50f1d1a384dd78767c55493e4bb","name":"GitHub"},"entity":{"external_key":"github/PacificBiosciences/FALCON_unzip","title":"PacificBiosciences/FALCON_unzip","subtitle":"GitHub repository","main_image_url":" https://cloud.githubusercontent.com/assets/143418/17495839/a5054eac-5d88-11e6-95fc-7290892c7bb5.png ","avatar_image_url":" https://cloud.githubusercontent.com/assets/143418/15842166/7c72db34-2c0b-11e6-9aed-b52498112777.png","action":{"name":"Open in GitHub","url":"https://github.com/PacificBiosciences/FALCON_unzip"}},"updates":{"snippets":[{"icon":"PERSON","message":"@pb-jchin in #41: No. FALCON_unzip uses bam file (instead of hdf5 file base) based consensus pipeline which only exists after 3.0. "}],"action":{"name":"View Issue","url":" https://github.com/PacificBiosciences/FALCON_unzip/issues/41#issuecomment-258567515 "}}}

[peterdfields]

There is mention of the download in the FAQ but the address and login no longer work:

https://github.com/PacificBiosciences/FALCON_unzip/wiki/FAQ

[mahulchak]

No it does not work! Where can I find smrtanalysis v3.0 or later?

[pb-jchin]

Please contact the vendor who gives you the data, ask them to file a request ticker through the commercial customer support system. I can't comment on the official software here.