Empty FALCON folder

[mictadlo]

Hi, I downloaded wget -c https://github.com/PacificBiosciences/FALCON_unzip/archive/funzip_052016.tar.gz, but the FALCON folder is empty and probably therefore I'm getting:

  File "/QRISdata/Q0231/apps/conda-bld/falcon-unzip_1478289794433/_t_env/bin/fc_unzip.py", line 4, in <module>
    __import__('pkg_resources').run_script('falcon-unzip==0.1.0', 'fc_unzip.py')
  File "/QRISdata/Q0231/apps/conda-bld/falcon-unzip_1478289794433/_t_env/lib/python2.7/site-packages/pkg_resources/__init__.py", line 744, in run_script
    self.require(requires)[0].run_script(script_name, ns)
  File "/QRISdata/Q0231/apps/conda-bld/falcon-unzip_1478289794433/_t_env/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1499, in run_script
    exec(code, namespace, namespace)
  File "/QRISdata/Q0231/apps/conda-bld/falcon-unzip_1478289794433/_t_env/lib/python2.7/site-packages/falcon_unzip-0.1.0-py2.7.egg-info/scripts/fc_unzip.py", line 1, in <module>
    from falcon_kit import run_support as support
ImportError: No module named falcon_kit

Could you please add the content to FALCON inside the tar.gz?

Thank you in advance.

Mic

[pb-jchin]

FALCON_unzip is supposed to run in the FALCON environment. It seems that you did not install it it, please check https://github.com/PacificBiosciences/FALCON-integrate/wiki/Installation to see how to install the FALCON environment.

[mictadlo]

Hi, when I download https://github.com/PacificBiosciences/FALCON-integrate/archive/v0.4.2.tar.gz folders such as DALIGNER, DAZZ_DB, ... are empty, too.

[pb-cdunn]

GitHub does not archive git-submodules. You would have to grab their archives separately.

IMO, it's much easier to use git directly:

git clone FALCON-integrate (from wherever)
cd FALCON-integrate
git checkout 0.4.2
git submodule update --init

See the wiki Jason posted above.