Closed pb-cdunn closed 7 years ago
$ lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 14.04 LTS
Release: 14.04
Codename: trusty
Also happens on Centos6.6.
Apparently, our Anaconda picks up its own shared libraries, despite my LD_LIBRARY_PATH
.
export HDF5_DISABLE_VERSION_CHECK=1
Seems to work for pbalign, but fails for ConsensusCore.
ImportError: /mnt/software/a/anaconda2/4.2.0/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /home/UNIXHOME/cdunn/repo/gh/FALCON-integrate/FALCON-examples/run/greg200k-sv2/DOWN/lib/python2.7/site-packages/ConsensusCore-1.0.2-py2.7.egg/_ConsensusCore.so)
Yes, I first ran module load gcc/4.9.2
, which solved the glibcxx problem for other Pythons. Possibly, Anaconda uses its own libgcc too? Maybe via rpath when built?
Other Python works fine. Closing.