search

PacificBiosciences / HiFi-human-WGS-WDL

BSD 3-Clause Clear License
52 stars 30 forks source link

Additional WGS-WDL backends - using Kubernetes #137

Open MireiaBN opened 4 months ago

MireiaBN commented 4 months ago

Is your feature request related to a problem? Please describe. We are going to use the WGS-WDL pipeline for LR PacBio sequencing. We will set it up on the recommended backends according to the specified documentation. However, we have a Kubernetes infrastructure that would like to use since it would be more efficient in the long term.

Describe the solution you'd like Support to run succesfully the WGS-WDL pipeline on a Kubernetes infrastructure.

Describe alternatives you've considered NA.

Additional context NA

williamrowell commented 3 months ago

Hello,

Do you have any examples or documentation for running Cromwell on k8s? I have only been able to find this 2 year old README from IBM: https://github.com/IBM/cromwell-on-ibmcloud/blob/main/k8s/README.md. Given that I don't have much direct experience with k8s or a place to test, I think it's unlikely that I'll be able to get to this any time soon. Can you provide examples of what would need to change in the backend configuration?