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PacificBiosciences / HiFi-human-WGS-WDL

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paraphase_vcfs question #165

Closed gevro closed 1 week ago

gevro commented 1 week ago

Hi, In v2.0.4, why is paraphase_vcfs marked as an optional output?

Array[File?] paraphase_vcfs Paraphase VCFs Compressed as .tar.gz

Thanks

williamrowell commented 1 week ago

This output is set to optional to handle edge cases (such as testing with small subset BAMs) where the input BAM may be missing regions. Setting optional output allows the task to complete.