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PacificBiosciences / HiFi-human-WGS-WDL

BSD 3-Clause Clear License
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v2.0.4 on Terra #168

Closed gevro closed 2 hours ago

gevro commented 3 hours ago

Hi, Is the family.wdl of v2.0.4 compatible with Terra? The documentation does not explicitly say so. Thanks

williamrowell commented 2 hours ago

family.wdl jobs can be launched in Terra, but because the input contains a custom struct (Family family), it doesn't fit easily into the Terra data model and requires loading from an inputs.json ("Upload json") or cutting and pasting the struct into the humanwgs_family -> family field.

singleton.wdl has been designed to work better with Terra and the Terra data model. All inputs have 1:1 key:value mapping (except for the array of hifi_reads), and all outputs have 1:1 key:value mapping.