issues
search
PacificBiosciences
/
HiFiCNV
Copy number variant caller and depth visualization utility for PacBio HiFi reads
BSD 3-Clause Clear License
34
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
produce valid BED records for short sequences
#29
ptrebert
closed
3 days ago
3
question about using deepvariant or deepsomatic to get vcf file as HiFiCNV input
#28
DayTimeMouse
closed
1 month ago
2
Use CHM13v2.0.fa as reference
#27
DayTimeMouse
closed
1 month ago
2
female sample was detected deletion in chrX and duplication in chrY
#26
linlin-coder
closed
4 months ago
0
Error: No usable bins found for haploid depth estimation
#25
fellen31
closed
5 months ago
7
ERROR: "Diploid chromosome regex '.' does not match any sample chromosome names..."
#24
seetarajpara
closed
6 months ago
4
Error in BAM Scanner: 'unwrap!
#23
mugglejolin
closed
6 months ago
3
what index file does rust hificnv expect? is there a way to explicitly specify the index?
#22
Carl-labhub
closed
5 months ago
2
applicability to the mouse genome
#21
splaisan
closed
5 months ago
3
question about benchmark comparison
#20
crazysummerW
closed
5 months ago
4
Define CNV genotype strategy
#19
ctsa
opened
1 year ago
4
Screening for LOH from CNV results
#18
Bio-WYX
opened
1 year ago
4
Genotype 1/1
#17
NannapatS
closed
1 year ago
5
Error while writing bigwig file
#16
Noam-Hadar
closed
1 year ago
3
Deepvariant file for minor allele frequency calculation
#15
priyambial123
closed
1 year ago
2
Assertion failed message
#14
priyambial123
closed
1 year ago
7
Joint variant calling
#13
priyambial123
closed
1 year ago
4
Why is the starting point of the detected CNV always an integer+1
#12
linlin-coder
closed
1 year ago
5
thread '<unnamed>' panicked at 'called `Option::unwrap()` on a `None` value', src/bam_scanner.rs:234:41
#11
linlin-coder
closed
1 year ago
3
Variation Type Results
#10
ghost
closed
1 year ago
1
configuration files (hg19 support)
#9
ghost
closed
1 year ago
6
Difference reference file errors
#8
Gedofs
closed
1 year ago
7
document changes for minimap2 support
#7
holtjma
closed
1 year ago
0
which aligner is recommended?
#6
AhmedArslan
closed
1 year ago
3
assertion failed: haploid_coverage >= 0.0
#5
steven-solar
closed
1 year ago
4
thread '<unnamed>' panicked at 'called `Result::unwrap()`
#4
joanocha
closed
1 year ago
14
documenting change for v0.1.4
#3
holtjma
closed
1 year ago
0
MAF file required?
#2
RhettRautsaw
closed
1 year ago
1
Documentation
#1
holtjma
closed
1 year ago
0