Adds support for CRAM input and output files. Resolves #6.
The reference file (--reference) is now a required parameter for HiPhase. This prevents users from accidentally forgetting the reference file which leads to drastically different performance.
Fixed
Corrected an error where bgzipped reference files were not correctly loading
v0.9.0
Changes
--reference) is now a required parameter for HiPhase. This prevents users from accidentally forgetting the reference file which leads to drastically different performance.Fixed