PacificBiosciences / HiPhase

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

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documentation changes for v0.8.1 #8

Closed holtjma closed 1 year ago

holtjma commented 1 year ago

v0.8.1

Changes

Adds --ignore-read-groups flag that will skip the read group checks for provided BAM files. This option can only be used to phase one dataset at a time. Resolves #3.
Adds --haplotag-file option that will create a TSV/CSV file containing read haplotag information. Resolves #4.

Fixed

Corrected some typos in CLI help menu
Changes HP tag in output BAM files from an i32 to a u8